OmicLoupe v1.1.7

Load data

Detect sample col.

Two datasets

Matched samples

Discard dups.

Skip correlation

Status:

Dataset

Download example data

Choose data file (TSV)

Browse...

Select columns

Feature column

Annotation column

Design

Choose design file (TSV)

Browse...

Sample column

Default condition column

Assigned columns

Assigned sample columns (dataset 1)

Assigned statistics columns (dataset 1)

Choose data file (TSV)

Browse...

Select columns

Feature column

Annotation column

Choose design file (TSV)

Browse...

Sample column

Default condition column

Assigned sample columns (dataset 2)

Assigned statistics columns (dataset 2)

Table Setup

Truncate strings longer than

Round numbers digits

Display fields

Stat pattern, P-value

Stat pattern, FDR

Stat pattern, log fold

Stat pattern, expression

Download table

Output Settings

Figure save format

Figure save width

Figure save height

Figure save dpi (only static)

Input help

The input format for OmicLoupe

Loading your data into OmicLoupe

Using OmicLoupe for data exploration

The full list of tutorial videos

Any future tutorial videos will be uploaded to the following Youtube playlist: https://www.youtube.com/playlist?list=PLUSAOuk3pSE3r5YiGbxUck3Hr4SFeHS1T

Quality

Settings Report

Reference dataset

Comparison dataset

Color

Do violin

Rotate label

Order on condition

Numeric as category

No settings

Show missing ref.

Show missing comp.

Rotate label

Histogram column ref

Fill column ref

Histogram column comp

Fill column comp

Maximum color cats.

Histogram bins.

Numeric color bins

Dendrogram plot height (inactive, requires UI render)

Dendrogram text size

Show more settings

Custom title 1

Custom title 2

Text size

Download static (ref)

(Download interactive by hover option)

Download static (comp)

Custom x-label

Custom y-label

Principal Component Analysis

Settings Report

Reference dataset

Comparison dataset

Show pairplot

Pairplot PCs

PC1

PC2

Color

As factor

Shape

Filter samples

Filter condition

Display levels

PC1

PC2

Color

As factor

Shape

Filter samples

Filter condition

Display levels

Dot size

Scale

Center

Show labels

Show loadings

Variance filter

Custom title 1

Custom title 2

Text size

Statistical investigations

Settings Report

Coloring type

Plt1 PC

Plt2 PC

Bin numeric vals

Number bins

Ref. column

Comp. column

Ref. data

Comp. data

Ref. Comparison

Comp. Comparison

P-value cutoff

P-value type

Fold cutoff

Set same axis ranges

Show only shared features

Show more settings

Custom ref. header

Custom comp. header

PCA var. cut.

Bin count

Alpha (0 - 1)

Title font

Legend font

Axis font

Dot size

Legend text

Use WebGL (faster / lower res.)

Drag in figures to highlight features. Double click to unselect.

Download table

Show full table

Overlap study

Settings Report

Reference dataset

Comp. dataset

Ref. contr.

Comp. contr.

Stat. threshold

Stat. contrast type

Fold threshold

Use fold cutoff

Condition ref.

Selected levels ref.

Condition comp.

Selected levels comp.

Required minimum fraction to be considered present

Select target

Upset ref. choices

Upset comp. choices

Upset max comparisons (rows)

Upset max intersects (columns)

Order on degree

Fold split upset

Max fold comps

Show advanced settings

Download static

Select overlap

Display cross-section

Select overlap

Display cross-section (presence)

Download table

Correlation

Settings Report

P-value threshold

FDR threshold

Show Pearson

Show Spearman

Show Kendall

More settings

Download static

Font size

FeatureCheck

Settings Report

Reference dataset

Ref. cond.

Comp. dataset

Comp. cond.

Show boxplot

Show scatter

Show violin

Show advanced settings

Text size

Numeric as factor

Rotate x-labels

Feature selection mode

Ref. title

Comp. title

Order categories alphanumerically

Show legend

Download table